| ID | Protein Name | Uniprot ID | Organism | Partner | Detection method | PDB code | BMRB | Class | Fuzzy region | Reference |
| FC0041 | UmuD’2 | P0AG11 | Escherichia coli | UmuD’2 | CD, NMR | 1i4v | R | 25-37 | 18216271, 11483531 | |
| FC0042 | Protein Max | P61244 | Homo sapiens | DNA | NMR, CD, AUC | 1hlo, 1r05 | 6163, 5956 | F | 1-18; 93-132 | 16171389, 15381064 |
| FC0043 | Methyl CpG binding protein 2 (MeCP2) | P51608 | Homo sapiens | DNA | CD, AUC, FA | 3c2i, 1qk9 | F | 1-75; 164-210; 330-486 | 17371874, 20405910 | |
| FC0044 | Thymine-DNA glycosylase (TDG) | Q13569 | Homo sapiens | DNA | NMR | F | 340-410 | 18512959 | ||
| FC0045 | Neurogenin 1 (NGN1) | Q92886 | Homo sapiens | DNA | NMR, CD, FA, FTIR | F | 90-104 | 20102160 | ||
| FC0046 | Aplysia LAPS18-like protein (ApLLP) | B0FRH7 | Aplysia kurodai | DNA | CD, NMR | F | 1-11; 99-120 | 18078811 | ||
| FC0047 | Ets-1 transcription factor | P27577 | Mus musculus | DNA | NMR | 1mdm | 5991 | F | 244-300 | 15994560, 18692067 |
| FC0048 | Single-stranded DNA binding protein (SSB) | P0AGE0 | Escherichia coli | DNA | X-ray, FA | 1eyg | F | 113-177 | 15169953, 20360609 | |
| FC0049 | Positive cofactor 4 (PC4) | P53999 | Homo sapiens | DNA | NMR | 2c62 | 6098 | F | 1-60 | 16605275 |
| FC0050 | Positive cofactor 4 (PC4) | P53999 | Homo sapiens | VP16 | NMR | 2phe | 6098 | F | 1-60 | 16605275 |
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